- LAMP: multiple testing correction (PNAS, 2013)
- HomeoRoq: quantification and statistical RNA-seq analysis for allopolyploids (NAR, 2014)
- COSMOS: detecting large structural variations
- ChIP2LAMP: combining ChIP-seq and RNA-seq results for LAMP to detect combinatorial regulations
- LAMPLINK: An extension to find statistically significant SNP combinations from GWAS data with PLINK